•
DNADynamo can generate and display Global Multiple Sequence Alignments via Clustal Omega or Muscle, and also provides a
sophisticated alignment editor for correcting alignments and/or generating 'hand made' alignments
•
Clustal Omega (and MUSCLE) are free 'academically developed' software that performs multiple sequence alignments on DNA and
Protein Sequences. You may also be familiar with ClustalX - A Graphical User Interface to the ClustalW software.
•
DNADynamo can send your sequences to Clustal Omega or MUSCLE for alignment and display the Clustal Omega / MUSCLE output
files, conveniently integrating DNADynamo with Clustal Omega / MUSCLE.
•
In DNADynamo's 'paged' display output, annotations are displayed and can be added to the sequence alignments, integrating BLASTs,
genbank annotations, user defined annotations and annotated clustal omega /muscle multiple alignments. Coloured and annotated
alignments can be printed to pdf for publication or further import and modification in dedicated illustration software.
•
DNADynamo also provides a 'linear' alignment editor which supports mouse drag editing, making it easy to manually correct alignments
generated by clustal omega/muscle, or generate a complete 'hand made' alignment. When this editor is loaded with a DNA alignment,
you can display a correspondingly translated protein alignment, similar to the functionality provided by SE-AL software. Using these
functions it is possible to align the DNA sequences with respect to their protein translation, rather than just to the DNA sequence itself,
which some researchers believe generates a more meaningful alignment for input into phylogenetic tree software. With respect to this,
DNADynamo will also takes a bunch of DNA sequences, translate them, generate a protein alignment, and then re-assemble a DNA
alignment based on the protein alignment, which takes much of the work out of generating such translation respecting DNA alignments.
The alignments can be output as FASTA files or NEXUS files for input into phylogenetic software.
example alignment in
DNADynamos 'paged' display
which includes annotated
sequences. A linear alignment
editor that supports mouse
drag editing and simultaneous
dna->protein alignments is
also provided
DNADynamo
BlueTractorSoftware
•
Windows
•
OSX
•
Linux
•
DNADynamo can generate and display Global Multiple Sequence Alignments via Clustal Omega or Muscle, and also
provides a sophisticated alignment editor for correcting alignments and/or generating 'hand made' alignments
•
Clustal Omega (and MUSCLE) are free 'academically developed' software that performs multiple sequence
alignments on DNA and Protein Sequences. You may also be familiar with ClustalX - A Graphical User Interface to
the ClustalW software.
•
DNADynamo can send your sequences to Clustal Omega or MUSCLE for alignment and display the Clustal Omega
/ MUSCLE output files, conveniently integrating DNADynamo with Clustal Omega / MUSCLE.
•
In DNADynamo's 'paged' display output, annotations are displayed and can be added to the sequence alignments,
integrating BLASTs, genbank annotations, user defined annotations and annotated clustal omega /muscle multiple
alignments. Coloured and annotated alignments can be printed to pdf for publication or further import and
modification in dedicated illustration software.
•
DNADynamo also provides a 'linear' alignment editor which supports mouse drag editing, making it easy to manually
correct alignments generated by clustal omega/muscle, or generate a complete 'hand made' alignment. When this
editor is loaded with a DNA alignment, you can display a correspondingly translated protein alignment, similar to the
functionality provided by SE-AL software. Using these functions it is possible to align the DNA sequences with
respect to their protein translation, rather than just to the DNA sequence itself, which some researchers believe
generates a more meaningful alignment for input into phylogenetic tree software. With respect to this, DNADynamo
will also takes a bunch of DNA sequences, translate them, generate a protein alignment, and then re-assemble a
DNA alignment based on the protein alignment, which takes much of the work out of generating such translation
respecting DNA alignments. The alignments can be output as FASTA files or NEXUS files for input into phylogenetic
software.
example alignment in
DNADynamos 'paged' display
which includes annotated
sequences. A linear alignment
editor that supports mouse
drag editing and simultaneous
dna->protein alignments is
also provided
•
DNADynamo can generate and display Global Multiple Sequence
Alignments via Clustal Omega or Muscle, and also provides a
sophisticated alignment editor for correcting alignments and/or
generating 'hand made' alignments
•
Clustal Omega (and MUSCLE) are free 'academically developed'
software that performs multiple sequence alignments on DNA and
Protein Sequences. You may also be familiar with ClustalX - A
Graphical User Interface to the ClustalW software.
•
DNADynamo can send your sequences to Clustal Omega or MUSCLE
for alignment and display the Clustal Omega / MUSCLE output files,
conveniently integrating DNADynamo with Clustal Omega / MUSCLE.
•
In DNADynamo's 'paged' display output, annotations are displayed
and can be added to the sequence alignments, integrating BLASTs,
genbank annotations, user defined annotations and annotated clustal
omega /muscle multiple alignments. Coloured and annotated
alignments can be printed to pdf for publication or further import and
modification in dedicated illustration software.
•
DNADynamo also provides a 'linear' alignment editor which supports
mouse drag editing, making it easy to manually correct alignments
generated by clustal omega/muscle, or generate a complete 'hand
made' alignment. When this editor is loaded with a DNA alignment,
you can display a correspondingly translated protein alignment, similar
to the functionality provided by SE-AL software. Using these functions
it is possible to align the DNA sequences with respect to their protein
translation, rather than just to the DNA sequence itself, which some
researchers believe generates a more meaningful alignment for input
into phylogenetic tree software. With respect to this, DNADynamo will
also takes a bunch of DNA sequences, translate them, generate a
protein alignment, and then re-assemble a DNA alignment based on
the protein alignment, which takes much of the work out of generating
such translation respecting DNA alignments. The alignments can be
output as FASTA files or NEXUS files for input into phylogenetic
software.
example alignment in DNADynamos 'paged' display which includes
annotated sequences. A linear alignment editor that supports mouse drag
editing and simultaneous dna->protein alignments is also provided
•
DNADynamo can generate and display Global
Multiple Sequence Alignments via Clustal
Omega or Muscle, and also provides a
sophisticated alignment editor for correcting
alignments and/or generating 'hand made'
alignments
•
Clustal Omega (and MUSCLE) are free
'academically developed' software that
performs multiple sequence alignments on
DNA and Protein Sequences. You may also be
familiar with ClustalX - A Graphical User
Interface to the ClustalW software.
•
DNADynamo can send your sequences to
Clustal Omega or MUSCLE for alignment and
display the Clustal Omega / MUSCLE output
files, conveniently integrating DNADynamo
with Clustal Omega / MUSCLE.
•
In DNADynamo's 'paged' display output,
annotations are displayed and can be added
to the sequence alignments, integrating
BLASTs, genbank annotations, user defined
annotations and annotated clustal omega
/muscle multiple alignments. Coloured and
annotated alignments can be printed to pdf
for publication or further import and
modification in dedicated illustration
software.
•
DNADynamo also provides a 'linear'
alignment editor which supports mouse drag
editing, making it easy to manually correct
alignments generated by clustal
omega/muscle, or generate a complete 'hand
made' alignment. When this editor is loaded
with a DNA alignment, you can display a
correspondingly translated protein alignment,
similar to the functionality provided by SE-AL
software. Using these functions it is possible
to align the DNA sequences with respect to
their protein translation, rather than just to
the DNA sequence itself, which some
researchers believe generates a more
meaningful alignment for input into
phylogenetic tree software. With respect to
this, DNADynamo will also takes a bunch of
DNA sequences, translate them, generate a
protein alignment, and then re-assemble a
DNA alignment based on the protein
alignment, which takes much of the work out
of generating such translation respecting
DNA alignments. The alignments can be
output as FASTA files or NEXUS files for input
into phylogenetic software.
example alignment in DNADynamos 'paged' display
which includes annotated sequences. A linear
alignment editor that supports mouse drag editing
and simultaneous dna->protein alignments is also
provided
