Virtual PCR
You can generate the theoretical product of a PCR reaction with two saved oligos in a new DNADynamo window. First, select the two oligos to be used from the 'Features' oligo map window using the pull down menu generated by clicking the mouse.

When both forward and reverse oligos have been set, a new window containing the product can be opened using menu option 'Manipulate Sequence' -> 'PCR'. This PCR function is probably of most use when generating DNA Sequences representing the products of subcloning an insert into a vector with the 'Virtual Cloning' Tools.

You can also access the function from within the 'virtual cloning' tool itself.